Research Clusters

A Biostatistics & Bioinformatics Cluster
Principal focus: Statistical Modelling/Bioinformatics
Primary members: 8
Sample outputs: 24
B de Brún Centre for Mathematics (Algebra, Geometry & Topology)
Principal focus: Group Theory
Primary members: 9⅓ plus 2 recent resignations
Sample outputs: 31
C de Brún Centre for Mathematics (Analysis)
Principal focus: Analysis and Topology
Primary members: 5
Sample outputs: 14
D Stokes Cluster for Applied Mathematics
Principal focus: Mathematical Modelling
Primary members: 5⅔
Sample outputs: 14
Total number of academics: 28 plus 2 recent resignations
Total sample outputs: 83

Sample of research outputs (2013-2017)

Academic Cluster Output URL
Dr John Burns B Burns, J. M.; Staunton, E.; Wraith, D. J. On the Jacobi equation and manifolds with multiple conjugate points, Math. Proc. R. Ir. Acad. 113 (2013), no. 1, 19–30. http://www.jstor.org/stable/23464537?seq=1-page_scan_tab_contents output description
B Burns, John M.; Makrooni, Mohammad A. Compact homogeneous spaces with positive Euler characteristic and their `strange formulae', Q. J. Math. 66 (2015), no. 2, 507–516. https://academic.oup.com/qjmath/article-lookup/doi/10.1093/qmath/hav009 output description
B Burns, John M.; Pfeiffer, G. Maximal order Abelian subgroups of Coxeter groups as discrete maximal tori, arXiv (2017). Available at https://arxiv.org/abs/1601.07812 output description
Dr James Cruickshank B Cruickshank, J.; Herman, A.; Quinlan, R.; Szechtman, F. Unitary groups over local rings. J. Algebra Appl. 13 (2014), no. 2, 1350093, 23 pp. output description
B Cruickshank, J. On spaces of infinitesimal motions and three dimensional Henneberg extensions. Discrete Comput. Geom. 51 (2014), no. 3, 702–721. output description
B Cruickshank, J.; Kitson, D.; Power, S.C. The generic rigidity of triangulated spheres with blocks and holes. J. Combin. Theory Ser. B 122 (2017), 550–577. output description
Dr Dieter Degrijse (resigned August 2017) B Aramayona, J.; Degrijse, D.; Martínez-Pérez, C.; Souto, J. Geometric dimension of lattices in classical simple Lie groups, J. Topology 10:2 (2017) 632-667. output description
B Degrijse, D. A cohomological characterization of locally virtually cyclic groups, Advances in Mathematics 305 (2017), 935-952. output description
B Degrijse, D.; Martínez-Pérez, C. Dimension invariants for groups admitting a cocompact model for proper actions, J. Reine Angew. Math. 721 (2016), 233-249. output description
Prof Michel Destrade D Destrade, M.; Saccomandi, G.; Sgura, I. Methodical fitting for mathematical models of rubber-like materials. Proceedings of the Royal Society A (2017). http://dx.doi.org/10.1098/rspa.2016.0811 output description
D Jiang, Y.; Li, G.; Qian, L.-X.; Liang, S.; Destrade, M.; Cao, Y. Measuring the linear and nonlinear elastic properties of brain tissue with shear waves and inverse analysis. Biomechanics and Modeling in Mechanobiology. (2015). http://dx.doi.org/10.1007/s10237-015-0658-0 output description
D Nolan, D.R.; Gower, A.L.; Destrade, M.; Ogden, R.W.; McGarry,J.P. A robust anisotropic hyperelastic formulation for the modelling of soft tissue. Journal of the Mechanical Behavior of Biomedical Materials (2014). http://dx.doi.org/10.1016/j.jmbbm.2014.06.016 output description
Prof Graham Ellis B Ellis, G. HAP -- Homological Algebra Programming computer package. Refereed package distributed with GAP - Groups, Algorithms, Programming - a System for Computational Discrete Algebra, version 1.11.15 (2017). http://www.gap-system.org/Packages/hap.html output description
B Ellis, G. ohomological periodicities of crystallographic groups. J. Algebra 445 (2016), 537–544. output description
B Bui, A.T.; Ellis, G. The homology of SL2(Z[1/m]) for small m. J. Algebra 408 (2014), 102–108. output description
Prof Dane Flannery B Detinko,A.; Flannery, D.L.; Hulpke,A. Zariski density and computing in arithmetic groups Mathematics of Computation (2017). http://www.ams.org/journals/mcom/0000-000-00/S0025-5718-2017-03236-1/home.html output description
B Egan, R.; Flannery, D.L. Automorphisms of generalized Sylvester Hadamard matrices, Discrete Mathematics (2017). output description
B Detinko, A.; Flannery, D.L.; O'Brien,E.A. Algorithms for linear groups of finite rank, Journal of Algebra (2013). output description
Dr Aaron Golden A Rhee, D.B.; Croken, M.M.; Shieh, K.R.; Sullivan, J.; Micklem, G.; Kim, K.; Golden, A. toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research, Database (Oxford). doi: 10.1093/database/bav066 (2015). output description
A Delio, M.; Patel, K.; Maslov, A.; Marion, R.W.; McDonald, T.V.; Cadoff, E.M.; Golden, A.; Greally, J.M.; Vijg, J.; Morrow, B.; Montagna, C. Development of a Targeted Multi-Disorder High-Throughput Sequencing Assay for the Effective Identification of Disease-Causing Variants, PLoS ONE, 10, 7:e0133742 (2015). http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133742 output description
A Golden, A.; Djorgovski, S.; Greally, J.M. Astrogenomics: big data, old problems, old solutions?, Genome Biology, 14, 8:129 (2013). https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-8-129 output description
Dr Michael Hayes D
Prof John Hinde A Coffey, N.; Hinde, J.; Holian, E. Clustering longitudinal profiles using P-splines and mixed effects models applied to time-course gene expression data, Computational Statistics and Data Analysis 71, (2014) 14-29. ISSN 0167-9473, http://dx.doi.org/10.1016/j.csda.2013.04.001. output description
A Alvarez-Iglesias, A.; Newell, J.; Scarrott, C.; Hinde, J. Summarising censored survival data using the mean residual life function, Statistics in Medicine 34 (2015) 1965–1976. doi: 10.1002/sim.6431 output description
A Minto, C,; Hinde, J.; Coelho, R. Including immature and unclassified individuals in sex-specific growth models, Canadian Journal of Fisheries and Aquatic Sciences doi.org/10.1139/cjfas-2016-0450 output description
Dr Emma Holian A McGuire, A.; Kalinina, O.; Holian, E; Curran, C.; Malone C.A.;, McLaughlin, R.; Lowery, A.; Brown, j.A.L.; Kerin, M.J. Differential impact of hormone receptor status on survival and recurrence for HER2 receptor-positive breast cancers treated with Trastuzumab, Breast Cancer Research and Treatment Volume 164, Issue 1, (2017) pp 221–229. ISSN 1573-7217, https://doi.org/10.1007/s10549-017-4225-5 output description
A Coffey, N.; Hinde, J.; Holian, E. Clustering longitudinal profiles using P-splines and mixed effects models applied to time-course gene expression data, Computational Statistics and Data Analysis 71, (2014) 14-29. ISSN 0167-9473, http://dx.doi.org/10.1016/j.csda.2013.04.001 output description
A Clancy, C.; Khan, S.; Glynn, C.L.; Holian, E.; Dockery, P.; Lalor, P.; Brown, J.A.L.; Joyce, M.R.; Kerin, M.J.; Dwyer, R. M. Screening of exosomal microRNAs from colorectal cancer cells, Cancer Biomarkers 17(4):1-9. September 2016 http://content.iospress.com/articles/cancer-biomarkers/cbm659 output description
Dr Kevin Jennings B
Dr Niall Madden C MacLachlan, S.; Madden, N. Robust Solution of Singularly Perturbed Problems Using Multigrid Methods, SIAM Journal on Scientific Computing (2013). doi.org/10.1137/120889770 output description
C Russell, S.; Madden, N. A multiscale sparse grid finite element method for a two-dimensional singularly perturbed reaction-diffusion problem, Advances in Computational Mathematics (2015). https://link.springer.com/article/10.1007/s10444-014-9395-7 output description
C Adler, J.; MacLachlan, S.; Madden, N. A first-order system Petrov–Galerkin discretization for a reaction–diffusion problem on a fitted mesh, IMA Journal of Numerical Analysis https://doi.org/10.1093/imanum/drv045 output description
Dr Michael McGettrick B Li, D.; Mc Gettrick, M.; Gao, F.; Xu, J.; WenQ.-Y. Generic quantum walks with memory on regular graphs, Physical Review A (2016). https://journals.aps.org/pra/abstract/10.1103/PhysRevA.93.042323 output description
D Mc Gettrick, M.; , Miszczak, J.A. Quantum walks with memory on cycles, Physica A - Statistical Mechanics and its Applications (2014). http://www.sciencedirect.com/science/article/pii/S0378437114000065 output description
D Di Franco, C.; Mc Gettrick, M.; Machida, T.; Busch, T. Measurement-Induced Generation of Spatial Entanglement in a Two-Dimensional Quantum Walk with Single-Qubit Coin, Journal of Computational and Theoretical Nanoscience (2013). https://doi.org/10.1166/jctn.2013.3098 output description
Dr Aisling McCluskey C Bruno, J.; McCluskey, A.; Szeptycki, P. Betweenness Relations in a Categorical Setting, Results in Mathematics 72, Issue 1 - 2, (2017) 649 - 664. https://link.springer.com/article/10.1007/s00025-017-0671-y output description
C Greenwood, S.; McCluskey, A. Continuous functions on Hausdorff continua, Topology and its Applications 212 (2016) 142- 165. output description
C McCluskey, A., McMaster, B. Undergraduate Topology - A Working Textbook, Oxford University Press 2016. http://ukcatalogue.oup.com/product/9780198702344.do output description
Dr Martin Meere D Vo, T.T.N.; Meere, M.G. Minimizing the passive release of heparin-binding growth factors from an affinity-based delivery system, Mathematical Medicine And Biology (2013) 30:357-382 output description
D McGinty, S.; Vo, T.T.N.; Meere, M.; McKee, S.; McCormick, C. Some design considerations for polymer-free drug-eluting stents: a mathematical approach, Acta Biomaterialia (2015) 18:213-215 output description
D Doherty, K.; Meere, M.; Piiroinen, P.T. Some Mathematical Models of Intermolecular Autophosphorylation, Journal Of Theoretical Biology (2015) 370:27-38 output description
Prof John Newell A Alvarez-Iglesias, A.; Hinde, J.; Ferguson, J.; Newell, J. An alternative pruning based approach to unbiased recursive partitioning, Computational Statistics & Data Analysis 106 (2016) 90-102. http://www.sciencedirect.com/science/article/pii/S016794731630192X output description
A Ferguson, J.; Alvarez-Iglesias, A.; Newell, J.; Hinde, J.; O'Donnell, M. Estimating average attributable fractions with confidence intervals for cohort and case-control studies, Statistical Methods in Medical Research (2016). http://journals.sagepub.com/doi/full/10.1177/0962280216655374 output description
A Alvarez-Iglesias, A.; Newell, J.; Scarrott, C.; Hinde, J. Summarising censored survival data using the mean residual life function, Statistics in Medicine 34 (2016) 1965–1976. doi: 10.1002/sim.6431. http://onlinelibrary.wiley.com/doi/10.1002/sim.6431/abstract output description
Dr Pilib Ó Broin A Ó Broin, P.; Vaitheesvaran, B.; Saha, S.; Hartil, K.; Chen E.I.; Goldman, D.; Fleming, W.H.; Kurland, I.J.; Guha, C.; Golden, A.i Intestinal microbiota-derived metabolomic blood plasma markers for prior radiation injury, International Journal of Radiation Oncology* Biology* Physics (2015). http://www.sciencedirect.com/science/article/pii/S036030161404293X output description
A Ó Broin, P.; Smith, T.J.; Golden, A. Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach, BMC bioinformatics (2015). https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0450-2 output description
A Takahashi, T. (*), Okabe, S. (*), Ó Broin, P. (*); Nishi, A. (*); Ye, K; Beckert, M.V.; Izumi, T.; Machida, A.; Kang, G.; Abe, S.; Pena, J.L.; Golden, A.; Kikusui, T; Hiroi, N. [(*) denotes equal contribution], Structure and function of neonatal social communication in a genetic mouse model of autism, Molecular psychiatry (2016). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909589/ output description
Prof Donal O'Regan C O'Regan, D. Generalized coincidence theory for set-valued maps, Journal of Nonlinear Science and Applications 10 (2017) 855-864. output description
C O'Regan, D. Generalized Lefschetz fixed point theorems in extension type spaces, Journal of Nonlinear science and Applications 8 (2015) 986-996. output description
C O'Regan, D. On the existence of connected sets of solutions for nonlinear operators, Fixed Point Theory 15 (2014) 189-198. output description
Prof Götz Pfeiffer B Ivan, M.; Pfeiffer, G. The BMR freeness conjecture for the 2-reflection groups, Mathematics of Computation 86:306 (2017) 2005-2023. http://dx.doi.org/10.1090/mcom/3142 output description
B Niemeyer, A.C.; Pfeiffer, G.; Praeger, Cheryl E. On the complexity of multiplication in the Iwahori-Hecke algebra of the symmetric group, Journal of Symbolic Computation 80:3 (2017) 817-832. http://dx.doi.org/10.1016/j.jsc.2016.09.001 output description
B Douglass, J.M.; Pfeiffer, G.; R\"ohrle, G. Cohomology of Coxeter arrangements and Solomon's descent algebra, Transactions of the American Mathematical Society 336:10 (2014) 5370-5407. http://dx.doi.org/10.1090/S0002-9947-2014-06060-1 output description
Dr Petri Piiroinen D O’Hora, D.; Dale, R.,;Piiroinen, P.T.; Connolly F. Local dynamics in decision making: The evolution of preference within and across decisions, Scientific Reports 3, Article no. 2210, Nature Publishing Group (2013). (DOI: 10.1038/srep02210) output description
D Donohue, J.G.; Piiroinen, P.T. athematical modelling of seasonal migration with applications to climate change, Ecological Modelling 299 (2015) 79-94. DOI: 10.1016/j.ecolmodel.2014.12.003 output description
D Burns, S.; Piiroinen P.T. A hybrid scheme for simulation of planar rigid bodies with impacts and friction using impact mappings, International Journal of Non-Linear Mechanics 77 (2015) 312-324. DOI: 10.1016/j.ijnonlinmec.2015.09.011 output description
Dr Rachel Quinlan (Head of School 2017-present) B Ha Van, H.; Quinlan, R, On the maximum rank of completions of entry pattern matrices, Linear Algebra Appl. 525 (2017) 1–19. output description
B O'Mahony, O,; Quinlan, R, Edge-minimal graphs of exponent 2, Linear Algebra Appl. (2017). https://doi.org/10.1016/j.laa.2017.02.004 output description
B McTigue, J.; Quinlan, R. Partial matrices whose completions all have the same rank, Linear Algebra Appl. 438 (2013), no. 1, 348–360. output description
Dr Claas Röver (resigned August 2017) B Burillo, J.; Cleary, S.; Martino, A.; Röver, C.E. Commensurations and Metric Properties of Houghton's Groups, Pacific Journal of Mathematics 285 vol. 2 (2016) 289-301. DOI: 10.2140/pjm.2016.285.289 output description
B Burillo, J.; Cleary, S.; Röver, C.E. Addendum to "Commensurations and Subgroups of Finite Index of Thompson's Group F", Geometry & Topology 17 (2013) 1199-1203. DOI: 10.2140/gt.2013.17.1199 output description
B Holt, D.F.; Rees, S.; Röver, C.E. Groups, Automata and Languages, LMS Student Texts, Cambridge University Press, (2017). http://www.cambridge.org/9781107152359 output description
Dr Ray Ryan (Head of School 2008 - 2017) C Cruickshank, J.; Loane, J.; Ryan, R. Positive Polynomials on Riesz Spaces, Positivity (2017). DOI 10.1007/s11117-016-0439-8 output description
C Abobaker, H.; Ryan, R. Modular Metric Spaces, Bulletin of the Irish Mathematical Society (2017) output description
Prof Cathal Seoighe A Seoighe, C.; Scally, A. Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data, PLoS Genetics (2017). https://doi.org/10.1371/journal.pgen.1006549 output description
A Yu, Y.; Ceredig, R.; Seoighe, C. ymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins, Nucleic Acids Research (2016). https://doi.org/10.1093/nar/gkv1016 output description
A Keane, P.; Ceredig, R,; Seoighe, C. Promiscuous mRNA splicing under the control of AIRE in medullary thymic epithelial cells, Bioinformatics (2015). https://doi.org/10.1093/bioinformatics/btu785 output description
Dr Jerome Sheahan A Broderick A.; Byrne M.; Armstrong S.; Sheahan J.; Coggins A.M. A pre and post evaluation of indoor air quality, ventilation, and thermal comfort in retrofitted co-operative social housing, Building And Environment 122 (2017) 126-133. output description
A Simmie, J. M.; Sheahan, J. N. Validation of a Database of Formation Enthalpies and of Mid-level Model Chemistries, Journal Of Physical Chemistry A 120 (2016) 7370-7384. http://pubs.acs.org/doi/full/10.1021/acs.jpca.6b07503 output description
A Manton, R.; Rau, H.; Fahy, F.; Sheahan, J.; Clifford, E. Using mental mapping to unpack perceived cycling risk, Accident Analysis And Prevention 88 (2016) 138-149. http://www.sciencedirect.com/science/article/pii/S0001457515301688 output description
Dr Emil Sköldberg B Sköldberg, E. The minimal resolution of a cointerval edge ideal is multiplicative, arXiv arXiv:1609.07356 (2016). output description
B Badiane, M.; Burke, I.; Sköldberg, E. he universal Gröbner basis of a binomial edge ideal, arXiv arXiv:1601.04575 output description
B Sköldberg, E. Algebraic Morse theory and homological perturbation theory, arXiv arXiv:1311.5803 output description
Dr Nina Snigireva C Roychowdhury, M.; Snigireva, N. Asymptotic of the geometric mean error in the quantization of recurrent self-similar measures, J. Math. Anal. Appl. (2015) 737-751. https://doi.org/10.1016/j.jmaa.2015.05.063 output description
C Snigireva, N.; Samuel, T.; Vince, A. Embedding the symbolic dynamics of Lorenz maps, Math. Proc. Cambridge Philos. Soc. 156 (2014), 505-519. https://doi.org/10.1017/S0305004114000061 output description
C Snigirev, A.M.; Snigireva, N.; Zinovjev G.M. Perturbative and nonperturbative correlations in double parton distributions, Physical Review D 90 014015 (2014). https://doi.org/10.1103/PhysRevD.90.014015 output description
Prof Michael Tuite B Tuite, M.P.; Hoang Dinh Van On exceptional vertex operator (super) algebras, in "Developments and Retrospectives in Lie Theory”, Developments in Mathematics (Springer Verlag) Volume 38 (2014) 351-384. https://link.springer.com/chapter/10.1007%2F978-3-319-09804-3_16 output description
B Tuite, M.P. Some generalizations of the MacMahon Master Theorem, J. Comb. Th. Series A 120 (2013) 92–101. http://www.sciencedirect.com/science/article/pii/S0097316512001318 output description
B Hurley, D.; Tuite, M.P. Virasoro correlation functions for vertex operator algebras, Int. J. Math. 23 1250106 (2012). http://www.worldscientific.com/doi/abs/10.1142/S0129167X12501066 output description
Dr Haixuan Yang A Smieszek, S.P.; Yang, H.; Paccanaro, A.; Devlin, P.F. Progressive promoter element combinations classify conserved orthogonal plant circadian gene expression modules, Journal of the Royal Society Interface (2014). http://rsif.royalsocietypublishing.org/content/11/99/20140535.short output description
A Predrag Radivojac, et al. [Yang, H. is the 42nd author among 102] A large-scale evaluation of computational protein function prediction, Nature Methods (2013). https://www.nature.com/nmeth/journal/v10/n3/full/nmeth.2340.html output description
A Yang, H.; Seoighe, C. Impact of the Choice of Normalization Method on Molecular Cancer Class Discovery Using Nonnegative Matrix Factorization, PLOS One (2016). http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0164880 output description
Dr Giuseppe Zurlo D Zurlo G.; Truskinovsky L. Printing Non-Euclidean Solids, Physical Review Letters 119, 048001 (2017). https://doi.org/10.1103/PhysRevLett.119.048001 output description
D Zurlo G.; Destrade M.; DeTommasi D.; Puglisi G. Catastrophic Thinning of Dielectric Elastomers, Physical Review Letters 118, 078001 (2017). https://doi.org/10.1103/PhysRevLett.118.078001 output description
D Colonnelli S.; Saccomandi G.; Zurlo G. The role of material behavior in the performances of electroactive polymer energy harvesters, Journal of Polymer Science Part B Polymer Physics 53(18) (2015). https://doi.org/10.1002/polb.23761 output description

Some Information on Research In the School

Cluster Item Author URL
A,B,C,D School's research envirnoment G. Ellis description
A Impact case study: Application of computational inference in elite sports J. Newell description
B Impact case study: Application of symbolic computation in algebra research G. Pfeiffer description
D Impact case study: The mechanics of soft tissues M. Destrade description